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XmaJI (AvrII)

Kód produktu: ER1561 Kód výrobce: ER1561 Kód dodavatele: {B5FE45AD-1182-4EDB-975B-562280E5EE5F} Výrobce: Life Technologies Czech Republic s.r.o.
5 971,35 Kč
4 935,00 Kč bez DPH
do týdne
200 Units

5'...CC T A G G...3'
3'...G G A T CC...5'

Zobraz detailní popis
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Detailní popis

Thermo Scientific conventional restriction endonucleases are a large collection of high quality restriction enzymes, optimized to work in one of the buffers of the Five Buffer System. In addition, the universal Tango buffer is provided for convenience in double digestions. All of the enzymes exhibit 100% activity in the recommended buffer and reaction conditions. To ensure consistent performance, Thermo Scientific restriction enzyme reaction buffers contain premixed BSA, which enhances the stability of many enzymes and binds contaminants that may be present in DNA preparations.

Highlights

  • Superior quality – stringent quality control and industry leading manufacturing process
  • Convenient color-coded Five Buffer System
  • Includes universal Tango buffer for double-digestions
  • BSA premixed in reaction buffers
  • Wide selection of restriction endonuclease specificities

Applications

  • Molecular cloning
  • Restriction site mapping
  • Genotyping
  • Southern Blot
  • Restriction fragment length polymorphism (RFLP)
  • SNP

Note

For methylation sensitivity refer to product specifications.

Compatible Ends CCTAGG - BcuI, NheI, XbaI, Eco130I.
Conditions for 100% Activity
  • 1X Buffer Tango: 33 mM Tris-acetate (pH 7.9 at 37°C), 10 mM Mg-acetate, 66 mM K-acetate, and 0.1 mg/mL BSA
  • Incubate at 37°C
Digestion of Agarose-embedded DNA Minimum 10 units of the enzyme are required for complete digestion of 1 µg of agarose-embedded lambda DNA in 16 hours.
Double Digestion Perform double digestion using DoubleDigest.
Hazardous No
Isoschizomers Search for commercial isoschizomers using REsearch.
Storage Buffer XmaJI is supplied in 10 mM Tris-HCl (pH 7.4 at 25°C), 100 mM KCl, 1 mM DTT, 1 mM EDTA, 0.2 mg/mL BSA, and 50% (v/v) glycerol.
Storage Condition -20 C

Reaction conditions

Recommended buffer for 100% activity Optimal temperature Enzyme activity in Thermo Scientific buffers, % Tango buffer for double digestion
B (blue)
1X
G (green)
1X
O (orange)
1X
R (red)
1X
Tango
(yellow)
1X / 2X
Tango 37°C 20-50 50-100 50-100 50-100 100 50-100 1X or 2X

Methylation Effects

  • Dam: never overlaps - no effect.
  • Dcm: never overlaps - no effect.
  • CpG: never overlaps - no effect.
  • EcoKI: never overlaps - no effect.
  • EcoBI: never overlaps - no effect.

Cleavage efficiency close to the termini of PCR fragments

bp from the recognition site to fragment end
1 2 3 4 5
50-100

Number of recognition sites in DNA molecules

Lambda ΦX174 M13mp18/19 pBR322 puc18/19 pUC57
2 0 0 0 0 0
pTZ19R/U pTZ57R pBluescriptIIKS(-/+) pBluescriptIISK(-/+) pACYC177 pACYC184
0 0 0 0 0 0

New sites generated by ligation

Newly generated recognition sites resulting from ligation of protruding compatible DNA ends

Recognition Sequence Second Enzyme Enzymes recognizing newly generated recognition sequence
C^CTAGG
  • BcuI (SpeI)/FastDigest SpeI (BcuI) (A^CTAGT)
  • NheI/FastDigest NheI (G^CTAGC)
  • XbaI/FastDigest XbaI (T^CTAGA)
  • FspBI (BfaI)/FastDigest BfaI (FspBI)
  • Eco130I (StyI)/FastDigest StyI (Eco130I)* (C^CTAGG)
  • BseDI (BsaJI)/FastDigest BsaJI (BseDI)
  • Eco130I (StyI)/FastDigest StyI (Eco130I)
  • FspBI (BfaI)/FastDigest BfaI (FspBI)
  • XmaJI (AvrII)/FastDigest AvrII (XmaJI)

Newly generated recognition sites resulting from fill-in of 5'-overhang and self-ligation

Recognition Sequence Newly generated sequence after reaction Enzymes that cleave the newly generated sequence
C^CTAGG CCTAGCTAGG
  • AluI/FastDigest AluI
  • CviJI
  • [FspBI (BfaI)/FastDigest BfaI (FspBI)]
  • SetI

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