CseI (HgaI)
Detailní popis
Thermo Scientific conventional restriction endonucleases are a large collection of high quality restriction enzymes, optimized to work in one of the buffers of the Five Buffer System. In addition, the universal Tango buffer is provided for convenience in double digestions. All of the enzymes exhibit 100% activity in the recommended buffer and reaction conditions. To ensure consistent performance, Thermo Scientific restriction enzyme reaction buffers contain premixed BSA, which enhances the stability of many enzymes and binds contaminants that may be present in DNA preparations.
Highlights
- Superior quality – stringent quality control and industry leading manufacturing process
- Convenient color-coded Five Buffer System
- Includes universal Tango buffer for double-digestions
- BSA premixed in reaction buffers
- Wide selection of restriction endonuclease specificities
Applications
- Molecular cloning
- Restriction site mapping
- Genotyping
- Southern Blot
- Restriction fragment length polymorphism (RFLP)
- SNP
Note
Assayed using pBR322 DNA (#SD0041). Low salt, high glycerol (> 5%) concentrations, pH > 8.0 or a large excess of enzyme may result in star activity. CseI may remain associated with the cleaved DNA. This may cause DNA band shifting during electrophoresis. To avoid atypical DNA band patterns, use the 6X DNA Loading Dye & SDS Solution for sample preparation, or heat the digested DNA in the presence of SDS prior to electrophoresis.
For methylation sensitivity refer to product specifications.
Conditions for 100% Activity |
|
Double Digestion | Perform double digestion using DoubleDigest. |
Hazardous | No |
Isoschizomers | Search for commercial isoschizomers using REsearch. |
Storage Condition | -20 C |
Reaction conditions
Recommended buffer for 100% activity | Optimal temperature | Enzyme activity in Thermo Scientific buffers, % | Tango buffer for double digestion | |||||
---|---|---|---|---|---|---|---|---|
B (blue) 1X |
G (green) 1X |
O (orange) 1X |
R (red) 1X |
Tango (yellow) 1X / 2X |
||||
R (Red) | 37°C | NR | 50-100† | 50-100 | 100 | 100† | 50-100 | 1X† or 2X |
† Star activity appears at a greater than 5-fold overdigestion (5 units x 1 hour).
Methylation Effects
- Dam: never overlaps - no effect.
- Dcm: may overlap - no effect.
- CpG: completely overlaps - blocked.
- EcoKI: never overlaps - no effect.
- EcoBI: may overlap - effect not determined.
Methylation type | Sequence | Cleavage effect |
---|---|---|
CpG | GACGC |
Blocked |
Cleavage efficiency close to the termini of PCR fragments
bp from the recognition site to fragment end | ||||
---|---|---|---|---|
1 | 2 | 3 | 4 | 5 |
50 to 100 |
Number of recognition sites in DNA molecules
Lambda | ΦX174 | M13mp18/19 | pBR322 | puc18/19 | pUC57 |
---|---|---|---|---|---|
102 | 14 | 7 | 11 | 4 | 4 |
pTZ19R/U | pTZ57R | pBluescriptIIKS(±) | pBluescriptIISK(±) | pACYC177 | pACYC184 |
4 | 4 | 4 | 4 | 5 | 9 |
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